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Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus



ABOUT THIS RECORD

ID: MNEST045508
species: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR162
source: microPC, original name: miR162

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCA

miRNA*
GAGGCAGCGGTTCATCGATC

mismatches: 4
bulges: 0

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pre-miRNA
TGGAGGCAGCGGTTCATCGATCTCTTCCTGTGGATTTTTTTGTTTGTTTCTTTGTTGTTGTTGGAAAGAGATTAAAAGCACGAACAGATCGATAAACCTC
TGCATCCA


dot-bracket secondary structure
.(((.((((.((((.((((((((.(((..(((..((((...((((.(((((...........))))).)))).)))).)))))).)))))))).)))).)
))).))).



SIMILARITIES
miRBase ath-MIR162a: 0.00000000002

PMRD ath-miR162a: 0.00000000002

microPC miR162: 4e-19
UniProt no hits

RFAM MIR162_2: 0.0000000004

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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